Diverse Molecular Genotypes of Mycobacterium tuberculosis Complex Isolates Circulating in the Free State, South Africa

Published ArticleTuberculosis is a serious public health concern especially in Africa and Asia. Studies describing strain diversity are lacking in the Free State region of South Africa. The aim of the study was to describe the diversity of Mycobacterium tuberculosis (M. tuberculosis) strain families in the Free State province of South Africa. A total of 86 M. tuberculosis isolates were genotyped using spoligotyping. A 12-locusmycobacterial interspersed repetitive units-variable-number tandem repeats (MIRU-VNTRs) typing was used to further characterize the resulting spoligotyping clusters. SITVITWEB identified 49 different patterns with allocation to six lineages including Latin-American-Mediterranean (LAM) (18 isolates), T (14 isolates), Beijing (five isolates), S (six isolates), Haarlem (one isolate), and X (five isolates), while 37 (43.0%) orphans were identified. Eight clusters included 37 isolates with identical spoligotypes (2 to 13/cluster). MIRU-VNTR typing further differentiated three spoligotyping clusters: SIT1/Beijing/MIT17, SIT33/LAM3/MIT213, and confirmed one SIT34/S/MIT311. In addition, SpolDB3/RIM assignment of the orphan strains resulted in a further 10 LAM and 13 T families. In total, LAM (28 isolates) and T (27 isolates) cause 63% of the individual cases of MTB in our study. The Free State has a highly diverse TB population with LAM being predominant. Further studies with inclusion of multidrug-resistant strains with larger sample size are warranted

Fitness correlates of male coloration in a Lake Victoria cichlid fish

Sexual selection by female choice has contributed to the rapid evolution of phenotypic diversity in the cichlid fish species flocks of East Africa. Yet, very little is known about the ecological mechanisms that drive the evolution of female mating preferences. We studied fitness correlates of male nuptial coloration in a member of a diverse Lake Victoria cichlid lineage, Pundamilia nyererei. In this species, male red coloration is subject to intraspecific sexual selection by female mate choice. Male nuptial coloration plays a critical role also in reproductive isolation between this species and the closely related sympatric species P. pundamilia. Here, we show that P. nyererei male coloration is carotenoid based, illustrating the potential for honest signaling of individual quality. In a wild population, we found that variation in male coloration was not associated with variation in a set of strongly intercorrelated indicators of male dominance: male size, territory size, and territory location. Instead, the 2 male characters that predominantly determine female choice, territory size and red coloration, may be independent predictors of male quality: males with bright red coloration and large territories had lower parasite infestation rates. As a result, female preferences tended to select against heavily parasitized males. Consistent with parasite-mediated sexual selection, males had higher and more variable parasite loads than female